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Papers within the last 9 years:
Yun Sun Lee, Edward L Braun, Erich Grotewold. (2024) Evolutionary trajectory of transcription factors and selection of targets for metabolic engineering. Philosophical Transactions B. 2024 Nov 18;379(1914):20230367. PMID: 39343015
Athanas Guzha, Barsanti Gautam, Damiano Marchiafava, Julius Ver Sagun, Tatiana Garcia, Brice A Jarvis, Allison M Barbaglia‐Hurlock, Christopher Johnston, Erich Grotewold, John C Sedbrook, Ana Paula Alonso, Kent D Chapman. (2024) Targeted modulation of pennycress lipid droplet proteins impacts droplet morphology and seed oil content. The Plant Journal. . PMID:
John Gray, Yi-Hsuan Chu, Ankita Abnave, Fabio Gomez Cano, Yun Sun Lee, Sarah Percival, Nan Jiang, Erich Grotewold. (2024) GRASSIUS 2.0: A gene regulatory information knowledgebase for maize and other grasses. Current Plant Biology. 40(2024):100396. PMID:
Jordan R Brock, Kevin A Bird, Adrian E Platts, Fabio Gomez-Cano, Suresh Kumar Gupta, Kyle Palos, Caylyn E Railey, Scott J Teresi, Yun Sun Lee, Maria Magallanes-Lundback, Emily G Pawlowski, Andrew DL Nelson, Erich Grotewold, Patrick P Edger. (2024) Exploring genetic diversity, population structure, and subgenome differences in the allopolyploid Camelina sativa: implications for future breeding and research studies. Horticulture Research. 2024 Sep 9;11(11):uhae2477. PMID:
Nan Jiang, Lina Gomez, Erich Grotewold. (2024) Extraction and Quantification of Total Anthocyanins, Determination of Anthocyanidin Core Structures, and Characterization of Specific Anthocyanins from Maize. Cold Spring Harbor Protocols. . PMID: 39187303
Nan Jiang, and Erich Grotewold. (2024) Flavonoids and Derived Anthocyanin Pigments in Plants—Structure, Distribution, Function, and Methods for Quantification and Characterization. Cold Spring Harbor Protocols. . PMID: 39187304
Lina Gomez, Nan Jiang, and Erich Grotewold. (2024) Extraction and Quantification of Phenolic Compounds in Maize. Cold Spring Harbor Protocols. . PMID: 39187305
Yi-Hsuan Chu, Yun Sun Lee, Fabio Gomez-Cano, Lina Gomez-Cano, Peng Zhou, Andrea I Doseff, Nathan Springer, Erich Grotewold. (2024) Molecular mechanisms underlying gene regulatory variation of maize metabolic traits. The Plant Cell. 2024, 00, 1–20. PMID: 38922302
Ankita Abnave, Jerrin John, Erich Grotewold, Andrea I. Doseff, John Gray. (2024) Upper level and cross hierarchical regulation of predominantly expressed phenolic genes in maize. Current Plant Biology. Volume 39, September 2024, 100364. PMID:
Koichi Sugimoto, Niloufer G Irani, Erich Grotewold, Gregg A Howe. (2024) Catalytically impaired chalcone isomerase retains flavonoid biosynthetic capacity. Plant Physiology. 2024: 00: 1–5. PMID: 38386294
Sarika Marathe, Erich Grotewold, Marisa S Otegui. (2024) Should I stay or should I go? Trafficking of plant extra-nuclear transcription factors. The Plant Cell. 2023: 1–16. PMID: 38163635
Sheng Ying, Brandon Webster, Lina Gomez-Cano, Kiran-Kumar Shivaiah, Qianjie Wang, Linsey Newton, Erich Grotewold, Addie Thompson, Peter K Lundquist. (2023) Multiscale physiological responses to nitrogen supplementation of maize hybrids. Plant Physiology. 2023: 00: 1–21. PMID: 37925649
Erika L Ellison, Peng Zhou, Peter Hermanson, Yi-Hsuan Chu, Andrew Read, Candice N Hirsch, Erich Grotewold, Nathan M Springer. (2023) Mutator transposon insertions within maize genes often provide a novel outward reading promoter. Genetics. 2023 Oct 10. PMID: 37815810
Hadi Nayebi Gavgani, Erich Grotewold, John Gray. (2023) Methodology for Constructing a Knowledgebase for Plant Gene Regulation Information. Methods Mol Biol. 2023:2698. PMID: 37682481
Cintia Lucía Arias, Leidy Tatiana García Navarrete, Eric Mukundi, Tyler Swanson, Fan Yang, Jonathan Hernandez, Erich Grotewold, Ana Paula Alonso. (2023) Metabolic and transcriptomic study of pennycress natural variation identifies targets for oil improvement. Plant Biotechnol J. 2023 Sep. PMID: 37335591
Ying Li, Erich Grotewold, Natalia Dudareva. (2023) Enough is enough: feedback control of specialized metabolism. Trends Plant Sci. 2023 Aug 23. PMID: 37625949
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold. (2023) Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proc Natl Acad Sci U S A. 120(19):e2219469120. PMID: 37126718
Johnston C, García Navarrete LT, Ortiz E, Romsdahl TB, Guzha A, Chapman KD, Grotewold E, Alonso AP. (2022) Effective Mechanisms for Improving Seed Oil Production in Pennycress ( Thlaspi arvense L.) Highlighted by Integration of Comparative Metabolomics and Transcriptomics. Front Plant Sci. 13:943585. PMID: 35909773
García Navarrete T, Arias C, Mukundi E, Alonso AP, Grotewold E. (2022) Natural variation and improved genome annotation of the emerging biofuel crop field pennycress (Thlaspi arvense). G3 (Bethesda). 12: jkac084. PMID: 35416986
Rodriguez J, Gomez-Cano L, Grotewold E, de Leon N. (2022) Normalizing and Correcting Variable and Complex LC-MS Metabolomic Data with the R Package pseudoDrift. Metabolites. 12: 435. PMID: 35629939
Gomez-Cano F, Chu YH, Cruz-Gomez M, Abdullah HM, Lee YS, Schnell DJ, Grotewold E. (2022) Exploring Camelina sativa lipid metabolism regulation by combining gene co-expression and DNA affinity purification analyses. Plant J. 110(2):589-606. PMID: 35064997
Ding X, Zhang X, Paez-Valencia J, McLoughlin F, Reyes FC, Morohashi K, Grotewold E, Vierstra RD, Otegui MS. (2022) Microautophagy Mediates Vacuolar Delivery of Storage Proteins in Maize Aleurone Cells. Front Plant Sci. 13:833612. PMID: 35251104
Moore BM, Lee YS, Wang P, Azodi C, Grotewold E, Shiu SH. (2022) Modeling temporal and hormonal regulation of plant transcriptional response to wounding. Plant Cell. 34(2):867-888. PMID: 34865154
Zhou P, Enders TA, Myers ZA, Magnusson E, Crisp PA, Noshay JM, Gomez-Cano F, Liang Z, Grotewold E, Greenham K, Springer NM. (2022) Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information. Plant Cell. 34(1):514-534. PMID: 34735005
Lee YS, Herrera-Tequia A, Silwal J, Geiger JH, Grotewold E. (2021) A hydrophobic residue stabilizes dimers of regulatory ACT-like domains in plant basic helix-loop-helix transcription factors. J Biol Chem. 296:100708. PMID: 33901489
Jiang N, Dillon FM, Silva A, Gomez-Cano L, Grotewold E. (2021) Corrigendum to "Rhamnose in plants - from biosynthesis to diverse functions". Plant Sci.. 307:110897. PMID: 33902856
Schmitz RJ, Grotewold E, Stam M. (2021) Cis-regulatory sequences in plants: Their importance, discovery, and future challenges. Plant Cell. 34(2):718-741. PMID: 34918159
Zhou P, Li Z, Magnusson E, Gomez Cano F, Crisp PA, et al.. (2020) Meta gene regulatory networks in maize highlight functionally rrelevant regulatory interactions. Plant Cell. 32: 1377-1396. PMID: 32184350
Yuan L, Grotewold E. (2020) Plant specialized metabolism. Plant Sci. 298:110579. PMID: 32771140
Jiang N, Gutierrez-Diaz A, Mukundi E, Lee YS, Meyers BC, et al. (2020) Synergy between the anthocyanin and RDR6/SGS3/DCL4 siRNA pathways expose hidden features of Arabidopsis carbon metabolism. Nat Commun. 11: 2456. PMID: 32415123
Jiang N, Dillon FM, Silva A, Gomez-Cano L, Grotewold E. (2020) Rhamnose in plants - from biosynthesis to diverse functions. Plant Sci. 302:110687. PMID: 33288005
Jiang N, Lee YS, Mukundi E, Gomez-Cano F, Rivero L, et al. (2020) Diversity of genetic lesions characterizes new Arabidopsis flavonoid pigment mutant alleles from T-DNA collections. Plant Sci. 291: 110335. PMID: 31928687
Jiang N, Gutierrez-Diaz A, Mukundi E, Lee YS, Meyers BC, Otegui MS, Grotewold E. (2020) Author Correction: Synergy between the anthocyanin and RDR6/SGS3/DCL4 siRNA pathways expose hidden features of Arabidopsis carbon metabolism. Nat Commun. 11(1):5276. PMID: 33057182
Gomez-Cano L, Gomez-Cano F, Dillon FM, Alers-Velazquez R, Doseff AI, et al. (2020) Discovery of modules involved in the biosynthesis and regulation of maize phenolic compounds. Plant Sci. 291: 110364. PMID: 31928683
Gomez-Cano F, Carey L, Lucas K, García Navarrete T, Mukundi E, Lundback S, Schnell D, Grotewold E. (2020) CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa. Database (Oxford). 2020:baaa075. PMID: 33306801
Springer N, de Leon N, Grotewold E. (2019) Challenges of translating gene regulatory information into agronomic improvements. Trends Plant Sci. 24: 1075-1082. PMID: 31377174
Silva GFF, Silva EM, Correa JPO, Vicente MH, Jiang N, et al. (2019) Tomato floral induction and flower development are orchestrated by the interplay between gibberellin and two unrelated microRNA-controlled modules. New Phytol. 221: 1328-1344. PMID: 30238569
Righini S, Rodriguez EJ, Berosich C, Grotewold E, Casati P, et al. (2019) Apigenin produced by maize flavone synthase I and II protects plants against UV-B-induced damage. Plant Cell Environ. 42: 495-508. PMID: 30160312
Milutinovic M, Lindsey BE, 3rd, Wijeratne A, Hernandez JM, Grotewold N, et al. (2019) Arabidopsis EMSY-like (EML) histone readers are necessary for post-fertilization seed development, but prevent fertilization-independent seed formation. Plant Sci. 285: 99-109. PMID: 31203898
Jones MA, Morohashi K, Grotewold E, Harmer SL. (2019) Arabidopsis JMJD5/JMJ30 acts independently of LUX ARRHYTHMO within the plant circadian clock to enable temperature compensation. Front Plant Sci. 10: 57. PMID: 30774641
Cocuron JC, Casas MI, Yang F, Grotewold E, Alonso AP. (2019) Beyond the wall: High-throughput quantification of plant soluble and cell-wall bound phenolics by liquid chromatography tandem mass spectrometry. J Chromatogr A. 1589: 93-104. PMID: 30626504
Ouma WZ, Pogacar K, Grotewold E. (2018) Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties. PLoS Comput Biol. 14: e1006098. PMID: 29708965
Mejia-Guerra MK, Li W, Doseff AI, Grotewold E. (2018) Genome-wide TSS identification in maize. Methods Mol Biol. 1830: 239-256. PMID: 30043374
Kovinich N, Wang Y, Adegboye J, Chanoca AA, Otegui MS, et al. (2018) Arabidopsis MATE45 antagonizes local abscisic acid signaling to mediate development and abiotic stress responses. Plant Direct. 2: e00087. PMID: 31245687
Chanoca A, Burkel B, Grotewold E, Eliceiri KW, Otegui MS. (2018) Imaging vacuolar anthocyanins with fluorescence lifetime microscopy. Methods Mol Biol. 1789: 131-141. PMID: 29916076
Yang F, Li W, Jiang N, Yu H, Morohashi K, et al. (2017) A maize gene regulatory network for phenolic metabolism. Mol Plant. 10: 498-515. PMID: 27871810
Mukundi E, Gomez-Cano F, Ouma WZ, Grotewold E. (2017) Design of knowledge bases for plant gene regulatory networks. Methods Mol Biol. 1629: 207-223. PMID: 28623588
McCluskey K, Boundy-Mills K, Dye G, Ehmke E, Gunnell GF, et al. (2017) The challenges faced by living stock collections in the USA. Elife. 6. PMID: 28266913
Lindsey BE, 3rd, Rivero L, Calhoun CS, Grotewold E, Brkljacic J. (2017) Standardized method for high-throughput sterilization of Arabidopsis seeds. J Vis Exp. . PMID: 29155739
Iwase A, Harashima H, Ikeuchi M, Rymen B, Ohnuma M, et al. (2017) WIND1 promotes shoot regeneration through transcriptional activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell. 29: 54-69. PMID: 28011694
Grotewold E, Springer NM. (2017) News from the plant world: Listening to transcription. Biochim Biophys Acta Gene Regul Mech. 1860: 1-2. PMID: 27866003
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, et al. (2017) The next generation of training for Arabidopsis researchers: Bioinformatics and quantitative biology. Plant Physiol. 175: 1499-1509. PMID: 29208732
Francis D, Finer JJ, Grotewold E. (2017) Challenges and opportunities for improving food quality and nutrition through plant biotechnology. Curr Opin Biotechnol. 44: 124-129. PMID: 28088010
Feller A, Yuan L, Grotewold E. (2017) The BIF domain in plant bHLH proteins is an ACT-like domain. Plant Cell. 29: 1800-1802. PMID: 28747421
Casas MI, Vaughan MJ, Bonello P, McSpadden Gardener B, Grotewold E, et al. (2017) Identification of biochemical features of defective Coffea arabica L. beans. Food Res Int. 95: 59-67. PMID: 28395826
Brkljacic J, Grotewold E. (2017) Combinatorial control of plant gene expression. Biochim Biophys Acta Gene Regul Mech. 1860: 31-40. PMID: 27427484
Yang F, Ouma WZ, Li W, Doseff AI, Grotewold E. (2016) Establishing the architecture of plant gene regulatory networks. Methods Enzymol. 576: 251-304. PMID: 27480690
Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, et al. (2016) 50 years of Arabidopsis research: highlights and future directions. New Phytol. 209: 921-944. PMID: 26465351
Jiang N, Doseff AI, Grotewold E. (2016) Flavones: From biosynthesis to health benefits. Plants (Basel). 5. PMID: 27338492
Grotewold E. (2016) Flavonols drive plant microevolution. Nat Genet. 48: 112-113. PMID: 26813762
Chanoca A, Burkel B, Kovinich N, Grotewold E, Eliceiri KW, et al. (2016) Using fluorescence lifetime microscopy to study the subcellular localization of anthocyanins. Plant J. 88: 895-903. PMID: 27500780
Casas MI, Falcone-Ferreyra ML, Jiang N, Mejia-Guerra MK, Rodriguez E, et al. (2016) Identification and characterization of maize salmon silks genes Involved in insecticidal maysin biosynthesis. Plant Cell. 28: 1297-1309. PMID: 27221383
Cardenas H, Arango D, Nicholas C, Duarte S, Nuovo GJ, et al. (2016) Dietary apigenin exerts immune-regulatory activity in vivo by reducing NF-kappaB activity, halting leukocyte infiltration and restoring normal metabolic function. Int J Mol Sci. 17: 323. PMID: 26938530
Agarwal T, Grotewold E, Doseff AI, Gray J. (2016) MYB31/MYB42 syntelogs exhibit divergent regulation of phenylpropanoid genes in maize, sorghum and rice. Sci Rep. 6: 28502. PMID: 27328708
Yuan L, Grotewold E. (2015) Metabolic engineering to enhance the value of plants as green factories.. Metab Eng. 27: 83-91. PMID: 25461830
Wang HZ, Yang KZ, Zou JJ, Zhu LL, Xie ZD, et al. (2015) Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism. Nat Commun. 6: 8822. PMID: 26578169
Velez-Bermudez IC, Salazar-Henao JE, Fornale S, Lopez-Vidriero I, Franco-Zorrilla JM, et al. (2015) A MYB/ZML complex regulates wound-induced lignin genes in maize. Plant Cell. 27: 3245-3259. PMID: 26566917
Ouma WZ, Mejia-Guerra MK, Yilmaz A, Pareja-Tobes P, Li W, et al. (2015) Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq). Sci Rep. 5: 8635. PMID: 25727450
Mejia-Guerra MK, Li W, Galeano NF, Vidal M, Gray J, et al. (2015) Core promoter plasticity between maize tissues and genotypes contrasts with predominance of sharp transcription initiation sites. Plant Cell. 27: 3309-3320. PMID: 26628745
Kovinich N, Kayanja G, Chanoca A, Otegui MS, Grotewold E. (2015) Abiotic stresses induce different localizations of anthocyanins in Arabidopsis. Plant Signal Behav. 10: e1027850. PMID: 26179363
Falcone Ferreyra ML, Emiliani J, Rodriguez EJ, Campos-Bermudez VA, Grotewold E, et al. (2015) The identification of maize and Arabidopsis type I FLAVONE SYNTHASEs links flavones with hormones and biotic interactions. Plant Physiol. 169: 1090-1107. PMID: 26269546
Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, et al. (2015) A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nat Commun. 6: 8821. PMID: 26578065
Chanoca A, Kovinich N, Burkel B, Stecha S, Bohorquez-Restrepo A, et al. (2015) Anthocyanin vacuolar inclusions form by a microautophagy mechanism. Plant Cell. 27: 2545-2559. PMID: 26342015